Computational Biochemistry of Protein for M.Sc. Study

Course Overview

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Last Updated On 16 November 2024

4 Students Enrolled
47 Downloadable Resources

Course Content

Start Date: 13/11/23
Category: ภาควิชาชีวเคมี

General

Announcements
Course coordinator/Lecturer: Dr. Kamonpan Sanachai...
Course Schedule 2/66
Evaluation criteria & Term project
Proposal format
Proposal submission; https://forms.gle/ZgZBAA...

1. Introduction to computational biochemistry of protein

Introduction to computational biochemistry of protein slide
What is a Protein?

2. Enzyme structure, catalysis and mechanism

2.Enzyme structure, catalysis and mechanism_KS
How Enzymes Work
Chimera User's Guide, accessed on 19 Nov, 2023;&nb...
Assignments Submission; https://forms.gle/8S9...

3. Structural bioinformatics

3.Structural bioinformatics
From DNA to protein - 3D

4. Protein sequence analysis

Protein sequence analysis slide
Assignments Submission; https://forms.gle/q6L...

5. Protein structure prediction

Protein structure prediction Slide
Homology modelling using SWISS-MODEL web server
Assignment submission; https://forms.gle/QZgm...

6. Protein-Target interactions

Protein-Target interactions Slide
Protein-Target interactions-Ep2 Slide
A basic introduction to drugs, drug targets, and molecular interactions
Bioinformatics: Swissdock Protein Ligand Docking
PubChem, ZINC, DrugBank databases for compounds
Input and Output files; https://drive.google....
Assignments Submission; https://forms.gle/vfN...

7. Advanced topic in protein-ligand interaction

Advanced topic in protein-ligand interaction Slide
Advanced topic in protein-ligand interaction-Ep2
Allylic Carbocyclic Inhibitors Covalently Bind Glycoside Hydrolases
Fragment-Based Dynamic Combinatorial Chemistry for Identification of Selective α‑Glucosidase Inhibitors
Inhibition of Enzyme at allosteric site
Fragment-based drug design tries to build a drug into a pocket

8. Protein engineering and design

Protein engineering and design Slide
Protein engineering and design-Ep2 Slide
5 challenges we could solve by designing new proteins | David Baker
Protein Engineering Technology
I-Tasser Software for Predicting Protein's Structure and Function
Assignments Submission; https://forms.gle/QKZ...
Input and Output files; https://drive.google....

9. Protein evolution

Protein evolution Slide
Adventures on the Routes of Protein Evolution—In Memoriam Dan Salah Tawfik (1955–2021)
Introduction to Phylogeny.fr
Using NCBI to build phylogenetic trees

10. Basics of molecular dynamics simulations

MD simulations Slide
Molecular dynamics simulation of the interaction of food proteins with small molecules
Molecular Dynamics Analysis of Binding Sites of Epidermal GrowthFactor Receptor Kinase Inhibitors
An Introduction to Molecular Dynamics-1
An Introduction to Molecular Dynamics Simulation-2
MD Teaching Clip

11. Protein dynamics and disease

Protein dynamics and disease Slide
The protein folding problem: a major conundrum of science
Protein Folding
Active Cage Mechanism of Chaperonin-Assisted Protein Folding Demonstrated at Single-Molecule Level

12. Applications of bioinformatics in protein research

Bioinformatics approaches to discovering food derived bioactive peptides
Current methods and applications in computational protein design for food industry
Bioinformatics: new tools and applications in life science and personalized medicine
In Silico Protein Analysis of Phoenix dactylifera (Date Palm) by a Bioinformatics Approach
Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2
Assignments Submission; https://forms.gle/Bw6...

13. Term project

Term project submission; https://forms.gle/fx...
Term project Slide Submission; https://f...

About the Instructor

Picture of กมลพรรณ เสนาชัย

3243 Students
36 Courses

กมลพรรณ เสนาชัย

kamosa

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SC857738 :: Computational Biochemistry of Protein for M.Sc. Study (2/67)

Teacher: อ.กมลพรรณ เสนาชัย

Skill Level: Beginner

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Price FREE

Enrol Now

Last Updated On 16 November 2024

4 Students Enrolled
47 Downloadable Resources

Course Features

Lectures14
Start Date13 Nov 2023
Skill level Beginner
Language English
Assessments Yes

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