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SC857738 :: Computational Biochemistry of Protein for M.Sc. Study (2/67)
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1. Introduction to computational biochemistry of protein
Introduction to computational biochemistry of protein slide
What is a Protein?
2. Enzyme structure, catalysis and mechanism
2.Enzyme structure, catalysis and mechanism_KS
How Enzymes Work
3. Structural bioinformatics
3.Structural bioinformatics
From DNA to protein - 3D
4. Protein sequence analysis
Protein sequence analysis slide
5. Protein structure prediction
Protein structure prediction Slide
Homology modelling using SWISS-MODEL web server
6. Protein-Target interactions
Protein-Target interactions Slide
Protein-Target interactions-Ep2 Slide
A basic introduction to drugs, drug targets, and molecular interactions
Bioinformatics: Swissdock Protein Ligand Docking
PubChem, ZINC, DrugBank databases for compounds
7. Advanced topic in protein-ligand interaction
Advanced topic in protein-ligand interaction Slide
Advanced topic in protein-ligand interaction-Ep2
Allylic Carbocyclic Inhibitors Covalently Bind Glycoside Hydrolases
Fragment-Based Dynamic Combinatorial Chemistry for Identification of Selective α‑Glucosidase Inhibitors
Inhibition of Enzyme at allosteric site
Fragment-based drug design tries to build a drug into a pocket
8. Protein engineering and design
Protein engineering and design Slide
Protein engineering and design-Ep2 Slide
5 challenges we could solve by designing new proteins | David Baker
Protein Engineering Technology
I-Tasser Software for Predicting Protein's Structure and Function
9. Protein evolution
Protein evolution Slide
Adventures on the Routes of Protein Evolution—In Memoriam Dan Salah Tawfik (1955–2021)
Introduction to Phylogeny.fr
Using NCBI to build phylogenetic trees
10. Basics of molecular dynamics simulations
MD simulations Slide
Molecular dynamics simulation of the interaction of food proteins with small molecules
Molecular Dynamics Analysis of Binding Sites of Epidermal GrowthFactor Receptor Kinase Inhibitors
An Introduction to Molecular Dynamics-1
An Introduction to Molecular Dynamics Simulation-2
11. Protein dynamics and disease
Protein dynamics and disease Slide
The protein folding problem: a major conundrum of science
Protein Folding
Active Cage Mechanism of Chaperonin-Assisted Protein Folding Demonstrated at Single-Molecule Level
12. Applications of bioinformatics in protein research
Bioinformatics approaches to discovering food derived bioactive peptides
Current methods and applications in computational protein design for food industry
Bioinformatics: new tools and applications in life science and personalized medicine
In Silico Protein Analysis of Phoenix dactylifera (Date Palm) by a Bioinformatics Approach
Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2
13. Term project
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Computational Biochemistry of Protein for M.Sc. Study
概要
SC857738 :: Computational Biochemistry of Protein for M.Sc. Study (2/67)
Teacher:
อ.กมลพรรณ เสนาชัย
Skill Level
:
Beginner
