KKU e-Learning
MD 627710 (MD627732-362732) :: Bioinformatics
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Please submit assignment by 6 Oct 2023
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Section 4
Section 5
Section 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Section 9
Handout CMA66_Grad
Section 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Section 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Section 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Section 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
Section 16
Section 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
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Course management
1
มคอ.3 AUN QA Bioinformatics and big data analysis
Fichier
Course syllabus MD362710 (copy)
Fichier
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Fichier
Course Orientation, by Dr.Wises
Fichier
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
Fichier
Functional Genomics
Fichier
DNA chip
Fichier
Introduction to microarrays
Fichier
Lessons from the Human Genome Project
Fichier
The Human Genome Has Finally Been Fully Sequenced
Fichier
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
Fichier
Assignment for Searching databases
Fichier
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
Fichier
FASTA and BLAST excercise (updated 2021)
Fichier
Answer to the FASTA exercise
Fichier
Analysis of DNA and protein sequences
Fichier
Section 6
5
Probe and Primer Design
Fichier
Validation of designed primers
Fichier
Probe and Primer Design manual
Fichier
sequence1
Fichier
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Devoir
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
Fichier
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
URL
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Devoir
Free software
7
Bioinfo-FreeSoftware65-2 pdf
Fichier
Practice manual of Free_software_64-1.doc
Fichier
BioEdit_version 7.2.0.zip (12.9 Mb)
Fichier
sequence_1.fasta
Fichier
sequence_2.fasta
Fichier
sequence_3.fasta
Fichier
sequence_4.fasta
Fichier
sequence_5.fasta
Fichier
sequence 3, 4 and 5 combined in FASTA format.txt
Fichier
ImageJ
Dossier
Gel electrophoresis image
Fichier
sequence1txt
Fichier
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Devoir
Zoom VDO of lecture Free software in bioinformatics
URL
Section 9
8
Handout CMA66_Grad
Fichier
Section 10
9
Handout Phylogenetic analysis
Fichier
VDO phylo lecture part 1
URL
Phylo lecture part 2 (Demon)
URL
LAB practice_Phylogenetic analysis by Kiatichai Faksri
Fichier
8 fasta sequences except Styphi
URL
Seaview5
Fichier
s. typhi 16srRNA
Fichier
fasta file 9 spp.
Fichier
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Devoir
Section 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Fichier
Section 12
11
Genome Wide Association Study
Fichier
Assignment GWAS Sep 2023
Fichier
Please submit assignment by 6 Oct 2023
Devoir
Section 13
12
Proteomic lecture
Fichier
16: System biology
13
Introduction to System biology handout 2021
Fichier
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
Fichier
Lecture handout NGS analysis
Fichier
Ubuntu Virtual OS (25 GB) and share folder (with codes)
URL
VDO: Setup the virtualbox and FastQC
URL
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
URL
VDO Link_NGS_Part2 (Week2 workshop)
Fichier
Assignment for NGS analysis (copy)
Fichier
FASTQ files to be used in assignment
URL
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Devoir
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
Devoir
MacBook M1/M2 need to download this version
URL
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
Fichier
RNA-seq data analysis lab briefing handout
Fichier
RNA-seq data analysis - assignment instruction
Fichier
RNA-seq data analysis - dataset for assignment
Fichier
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Devoir
Microbiome analysis
16
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MD 627710 (MD627732-362732) :: Bioinformatics
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Cours
Health Sciences
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MD627710 Bioinformatics and Big Data Analysis
Section 12
Please submit assignment by 6 Oct 2023
Please submit assignment by 6 Oct 2023
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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