KKU e-Learning
MD 627710 (MD627732-362732) :: Bioinformatics
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RNA-seq data analysis - assignment instruction
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Topic 4
Topic 5
Topic 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Topic 9
Handout CMA66_Grad
Topic 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Topic 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Topic 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Topic 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
Topic 16
Topic 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
Next
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1
มคอ.3 AUN QA Bioinformatics and big data analysis
File
Course syllabus MD362710 (copy)
File
Schedule of Bioinfomatics FIRST semester 2023 (V2)
File
Course Orientation, by Dr.Wises
File
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
File
Functional Genomics
File
DNA chip
File
Introduction to microarrays
File
Lessons from the Human Genome Project
File
The Human Genome Has Finally Been Fully Sequenced
File
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
File
Assignment for Searching databases
File
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
File
FASTA and BLAST excercise (updated 2021)
File
Answer to the FASTA exercise
File
Analysis of DNA and protein sequences
File
Topic 6
5
Probe and Primer Design
File
Validation of designed primers
File
Probe and Primer Design manual
File
sequence1
File
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
File
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
URL
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
7
Bioinfo-FreeSoftware65-2 pdf
File
Practice manual of Free_software_64-1.doc
File
BioEdit_version 7.2.0.zip (12.9 Mb)
File
sequence_1.fasta
File
sequence_2.fasta
File
sequence_3.fasta
File
sequence_4.fasta
File
sequence_5.fasta
File
sequence 3, 4 and 5 combined in FASTA format.txt
File
ImageJ
Folder
Gel electrophoresis image
File
sequence1txt
File
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
URL
Topic 9
8
Handout CMA66_Grad
File
Topic 10
9
Handout Phylogenetic analysis
File
VDO phylo lecture part 1
URL
Phylo lecture part 2 (Demon)
URL
LAB practice_Phylogenetic analysis by Kiatichai Faksri
File
8 fasta sequences except Styphi
URL
Seaview5
File
s. typhi 16srRNA
File
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Topic 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
File
Topic 12
11
Genome Wide Association Study
File
Assignment GWAS Sep 2023
File
Please submit assignment by 6 Oct 2023
Topic 13
12
Proteomic lecture
File
16: System biology
13
Introduction to System biology handout 2021
File
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
File
Lecture handout NGS analysis
File
Ubuntu Virtual OS (25 GB) and share folder (with codes)
URL
VDO: Setup the virtualbox and FastQC
URL
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
URL
VDO Link_NGS_Part2 (Week2 workshop)
File
Assignment for NGS analysis (copy)
File
FASTQ files to be used in assignment
URL
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
URL
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
File
RNA-seq data analysis lab briefing handout
File
RNA-seq data analysis - assignment instruction
File
RNA-seq data analysis - dataset for assignment
File
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
16
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MD 627710 (MD627732-362732) :: Bioinformatics
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MD627710 Bioinformatics and Big Data Analysis
RNA sequencing analysis
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - assignment instruction
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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