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  • MD 627710 (MD627732-362732) :: Bioinformatics
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    Course management
    มคอ.3 AUN QA Bioinformatics and big data analysis
    Course syllabus MD362710 (copy)
    Schedule of Bioinfomatics FIRST semester 2023 (V2)
    Course Orientation, by Dr.Wises
    BINF Post-Genomics
    Bioinformatics in Post-Genomic Era
    Functional Genomics
    DNA chip
    Introduction to microarrays
    Lessons from the Human Genome Project
    The Human Genome Has Finally Been Fully Sequenced
    Nucleic & protein database
    Data retrieval from public database_Sakawrat 2023
    Assignment for Searching databases
    Analysis of DNA & protein sequences
    Commonly used terms in bioinformatics
    FASTA and BLAST excercise (updated 2021)
    Answer to the FASTA exercise
    Analysis of DNA and protein sequences
    Section 4
    Section 5
    Section 6
    Probe and Primer Design
    Validation of designed primers
    Probe and Primer Design manual
    sequence1
    Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
    Structural genomics by Sorujsiri Chareonsudjai
    Structural genomics handout Dec 2023 (Sorujsiri)
    VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
    Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
    Free software
    Bioinfo-FreeSoftware65-2 pdf
    Practice manual of Free_software_64-1.doc
    BioEdit_version 7.2.0.zip (12.9 Mb)
    sequence_1.fasta
    sequence_2.fasta
    sequence_3.fasta
    sequence_4.fasta
    sequence_5.fasta
    sequence 3, 4 and 5 combined in FASTA format.txt
    ImageJ
    Gel electrophoresis image
    sequence1txt
    Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
    Zoom VDO of lecture Free software in bioinformatics
    Section 9
    Handout CMA66_Grad
    Section 10
    Handout Phylogenetic analysis
    VDO phylo lecture part 1
    Phylo lecture part 2 (Demon)
    LAB practice_Phylogenetic analysis by Kiatichai Faksri
    8 fasta sequences except Styphi
    Seaview5
    s. typhi 16srRNA
    fasta file 9 spp.
    Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
    Section 11
    Phamacogenomics 2023, second semesterr by Dr.Wichittra
    Section 12
    Genome Wide Association Study
    Assignment GWAS Sep 2023
    Please submit assignment by 6 Oct 2023
    Section 13
    Proteomic lecture
    16: System biology
    Introduction to System biology handout 2021
    High Throughput Sequencing Analysis I and II
    Please prepare your computer
    Lecture handout NGS analysis
    Ubuntu Virtual OS (25 GB) and share folder (with codes)
    VDO: Setup the virtualbox and FastQC
    VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
    VDO Link_NGS_Part2 (Week2 workshop)
    Assignment for NGS analysis (copy)
    FASTQ files to be used in assignment
    Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
    Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
    MacBook M1/M2 need to download this version
    Section 16
    Section 17
    Final Examination 2021 Second semester
    RNA sequencing analysis
    RNA-seq data analysis lecture handout
    RNA-seq data analysis lab briefing handout
    RNA-seq data analysis - assignment instruction
    RNA-seq data analysis - dataset for assignment
    HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
    Microbiome analysis
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    MD 627710 (MD627732-362732) :: Bioinformatics

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