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MD 627710 (MD627732-362732) :: Bioinformatics
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Lecture handout NGS analysis
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Tema 4
Tema 5
Tema 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Tema 9
Handout CMA66_Grad
Tema 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Tema 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Tema 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Tema 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
Tema 16
Tema 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
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Course management
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มคอ.3 AUN QA Bioinformatics and big data analysis
Archivo
Course syllabus MD362710 (copy)
Archivo
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Archivo
Course Orientation, by Dr.Wises
Archivo
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
Archivo
Functional Genomics
Archivo
DNA chip
Archivo
Introduction to microarrays
Archivo
Lessons from the Human Genome Project
Archivo
The Human Genome Has Finally Been Fully Sequenced
Archivo
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
Archivo
Assignment for Searching databases
Archivo
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
Archivo
FASTA and BLAST excercise (updated 2021)
Archivo
Answer to the FASTA exercise
Archivo
Analysis of DNA and protein sequences
Archivo
Tema 6
5
Probe and Primer Design
Archivo
Validation of designed primers
Archivo
Probe and Primer Design manual
Archivo
sequence1
Archivo
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Tarea
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
Archivo
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
URL
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Tarea
Free software
7
Bioinfo-FreeSoftware65-2 pdf
Archivo
Practice manual of Free_software_64-1.doc
Archivo
BioEdit_version 7.2.0.zip (12.9 Mb)
Archivo
sequence_1.fasta
Archivo
sequence_2.fasta
Archivo
sequence_3.fasta
Archivo
sequence_4.fasta
Archivo
sequence_5.fasta
Archivo
sequence 3, 4 and 5 combined in FASTA format.txt
Archivo
ImageJ
Carpeta
Gel electrophoresis image
Archivo
sequence1txt
Archivo
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Tarea
Zoom VDO of lecture Free software in bioinformatics
URL
Tema 9
8
Handout CMA66_Grad
Archivo
Tema 10
9
Handout Phylogenetic analysis
Archivo
VDO phylo lecture part 1
URL
Phylo lecture part 2 (Demon)
URL
LAB practice_Phylogenetic analysis by Kiatichai Faksri
Archivo
8 fasta sequences except Styphi
URL
Seaview5
Archivo
s. typhi 16srRNA
Archivo
fasta file 9 spp.
Archivo
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Tarea
Tema 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Archivo
Tema 12
11
Genome Wide Association Study
Archivo
Assignment GWAS Sep 2023
Archivo
Please submit assignment by 6 Oct 2023
Tarea
Tema 13
12
Proteomic lecture
Archivo
16: System biology
13
Introduction to System biology handout 2021
Archivo
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
Archivo
Lecture handout NGS analysis
Archivo
Ubuntu Virtual OS (25 GB) and share folder (with codes)
URL
VDO: Setup the virtualbox and FastQC
URL
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
URL
VDO Link_NGS_Part2 (Week2 workshop)
Archivo
Assignment for NGS analysis (copy)
Archivo
FASTQ files to be used in assignment
URL
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Tarea
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
Tarea
MacBook M1/M2 need to download this version
URL
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
Archivo
RNA-seq data analysis lab briefing handout
Archivo
RNA-seq data analysis - assignment instruction
Archivo
RNA-seq data analysis - dataset for assignment
Archivo
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Tarea
Microbiome analysis
16
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MD627710 Bioinformatics and Big Data Analysis
High Throughput Sequencing Analysis I and II
Lecture handout NGS analysis
Lecture handout NGS analysis
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NGS bioinformatic training FINAL2.pdf
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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