KKU e-Learning
MD 627710 (MD627732-362732) :: Bioinformatics
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Assignment for NGS analysis (copy)
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
ຫົວຂໍ້ 4
ຫົວຂໍ້ 5
ຫົວຂໍ້ 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
ຫົວຂໍ້ 9
Handout CMA66_Grad
ຫົວຂໍ້ 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
ຫົວຂໍ້ 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
ຫົວຂໍ້ 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
ຫົວຂໍ້ 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
ຫົວຂໍ້ 16
ຫົວຂໍ້ 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
Next
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Course management
1
มคอ.3 AUN QA Bioinformatics and big data analysis
ໄຟລ໌
Course syllabus MD362710 (copy)
ໄຟລ໌
Schedule of Bioinfomatics FIRST semester 2023 (V2)
ໄຟລ໌
Course Orientation, by Dr.Wises
ໄຟລ໌
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
ໄຟລ໌
Functional Genomics
ໄຟລ໌
DNA chip
ໄຟລ໌
Introduction to microarrays
ໄຟລ໌
Lessons from the Human Genome Project
ໄຟລ໌
The Human Genome Has Finally Been Fully Sequenced
ໄຟລ໌
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
ໄຟລ໌
Assignment for Searching databases
ໄຟລ໌
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
ໄຟລ໌
FASTA and BLAST excercise (updated 2021)
ໄຟລ໌
Answer to the FASTA exercise
ໄຟລ໌
Analysis of DNA and protein sequences
ໄຟລ໌
ຫົວຂໍ້ 6
5
Probe and Primer Design
ໄຟລ໌
Validation of designed primers
ໄຟລ໌
Probe and Primer Design manual
ໄຟລ໌
sequence1
ໄຟລ໌
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
ການມອບໝາຍ
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
ໄຟລ໌
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
URL
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
ການມອບໝາຍ
Free software
7
Bioinfo-FreeSoftware65-2 pdf
ໄຟລ໌
Practice manual of Free_software_64-1.doc
ໄຟລ໌
BioEdit_version 7.2.0.zip (12.9 Mb)
ໄຟລ໌
sequence_1.fasta
ໄຟລ໌
sequence_2.fasta
ໄຟລ໌
sequence_3.fasta
ໄຟລ໌
sequence_4.fasta
ໄຟລ໌
sequence_5.fasta
ໄຟລ໌
sequence 3, 4 and 5 combined in FASTA format.txt
ໄຟລ໌
ImageJ
ໂຟນເດີ
Gel electrophoresis image
ໄຟລ໌
sequence1txt
ໄຟລ໌
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
ການມອບໝາຍ
Zoom VDO of lecture Free software in bioinformatics
URL
ຫົວຂໍ້ 9
8
Handout CMA66_Grad
ໄຟລ໌
ຫົວຂໍ້ 10
9
Handout Phylogenetic analysis
ໄຟລ໌
VDO phylo lecture part 1
URL
Phylo lecture part 2 (Demon)
URL
LAB practice_Phylogenetic analysis by Kiatichai Faksri
ໄຟລ໌
8 fasta sequences except Styphi
URL
Seaview5
ໄຟລ໌
s. typhi 16srRNA
ໄຟລ໌
fasta file 9 spp.
ໄຟລ໌
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
ການມອບໝາຍ
ຫົວຂໍ້ 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
ໄຟລ໌
ຫົວຂໍ້ 12
11
Genome Wide Association Study
ໄຟລ໌
Assignment GWAS Sep 2023
ໄຟລ໌
Please submit assignment by 6 Oct 2023
ການມອບໝາຍ
ຫົວຂໍ້ 13
12
Proteomic lecture
ໄຟລ໌
16: System biology
13
Introduction to System biology handout 2021
ໄຟລ໌
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
ໄຟລ໌
Lecture handout NGS analysis
ໄຟລ໌
Ubuntu Virtual OS (25 GB) and share folder (with codes)
URL
VDO: Setup the virtualbox and FastQC
URL
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
URL
VDO Link_NGS_Part2 (Week2 workshop)
ໄຟລ໌
Assignment for NGS analysis (copy)
ໄຟລ໌
FASTQ files to be used in assignment
URL
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
ການມອບໝາຍ
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
ການມອບໝາຍ
MacBook M1/M2 need to download this version
URL
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
ໄຟລ໌
RNA-seq data analysis lab briefing handout
ໄຟລ໌
RNA-seq data analysis - assignment instruction
ໄຟລ໌
RNA-seq data analysis - dataset for assignment
ໄຟລ໌
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
ການມອບໝາຍ
Microbiome analysis
16
ຂ້າມໄປຫາເນື້ອຫາຫຼັກ
MD 627710 (MD627732-362732) :: Bioinformatics
ໜ້າຫຼັກ
ວິຊາ
Health Sciences
Medicine
ภาควิชาจุลชีววิทยา
MD627710 Bioinformatics and Big Data Analysis
High Throughput Sequencing Analysis I and II
Assignment for NGS analysis (copy)
Assignment for NGS analysis (copy)
ຄລິກລິ້ງ
NGS analysis assigment sheet.docx
ເພື່ອດາວໂຫຼດໄຟລ໌.
Previous Activity
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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