MD627710 Bioinformatics and Big Data Analysis: Data retrieval from public database

Data retrieval from public database_Sakawrat 2023

Data retrieval from public database_Sakawrat 2021

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Course management

มคอ.3 AUN QA Bioinformatics and big data analysis

Course syllabus MD362710 (copy)

Schedule of Bioinfomatics FIRST semester 2023 (V2)

Course Orientation, by Dr.Wises

BINF Post-Genomics

Bioinformatics in Post-Genomic Era

Functional Genomics

DNA chip

Introduction to microarrays

Lessons from the Human Genome Project

The Human Genome Has Finally Been Fully Sequenced

Nucleic & protein database

Data retrieval from public database_Sakawrat 2023

Assignment for Searching databases

Analysis of DNA & protein sequences

Commonly used terms in bioinformatics

FASTA and BLAST excercise (updated 2021)

Answer to the FASTA exercise

Analysis of DNA and protein sequences

Chủ đề 4

Chủ đề 5

Chủ đề 6

Probe and Primer Design

Validation of designed primers

Probe and Primer Design manual

sequence1

Assignment of primer design &amp; Submission link, First semester of 2023(within July, 30, 2023

Structural genomics by Sorujsiri Chareonsudjai

Structural genomics handout Dec 2023 (Sorujsiri)

VDO lecture: Structural genomics Aug 2022 (Sorujsiri)

Structural Genomics assignment submission (Due date 12 August 2023 :23.59)

Free software

Bioinfo-FreeSoftware65-2 pdf

Practice manual of Free_software_64-1.doc

BioEdit_version 7.2.0.zip (12.9 Mb)

sequence_1.fasta

sequence_2.fasta

sequence_3.fasta

sequence_4.fasta

sequence_5.fasta

sequence 3, 4 and 5 combined in FASTA format.txt

ImageJ

Gel electrophoresis image

sequence1txt

Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)

Zoom VDO of lecture Free software in bioinformatics

Chủ đề 9

Handout CMA66_Grad

Chủ đề 10

Handout Phylogenetic analysis

VDO phylo lecture part 1

Phylo lecture part 2 (Demon)

LAB practice_Phylogenetic analysis by Kiatichai Faksri

8 fasta sequences except Styphi

Seaview5

s. typhi 16srRNA

fasta file 9 spp.

Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)

Chủ đề 11

Phamacogenomics 2023, second semesterr by Dr.Wichittra

Chủ đề 12

Genome Wide Association Study

Assignment GWAS Sep 2023

Please submit assignment by 6 Oct 2023

Chủ đề 13

Proteomic lecture

16: System biology

Introduction to System biology handout 2021

High Throughput Sequencing Analysis I and II

Please prepare your computer

Lecture handout NGS analysis

Ubuntu Virtual OS (25 GB) and share folder (with codes)

VDO: Setup the virtualbox and FastQC

VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons

VDO Link_NGS_Part2 (Week2 workshop)

Assignment for NGS analysis (copy)

FASTQ files to be used in assignment

Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)

Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)

Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023