KKU e-Learning
MD 627710 (MD627732-362732) :: Bioinformatics
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RNA-seq data analysis - assignment instruction
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
主题 4
主题 5
主题 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
主题 9
Handout CMA66_Grad
主题 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
主题 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
主题 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
主题 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
主题 16
主题 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
Next
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Course management
1
มคอ.3 AUN QA Bioinformatics and big data analysis
文件
Course syllabus MD362710 (copy)
文件
Schedule of Bioinfomatics FIRST semester 2023 (V2)
文件
Course Orientation, by Dr.Wises
文件
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
文件
Functional Genomics
文件
DNA chip
文件
Introduction to microarrays
文件
Lessons from the Human Genome Project
文件
The Human Genome Has Finally Been Fully Sequenced
文件
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
文件
Assignment for Searching databases
文件
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
文件
FASTA and BLAST excercise (updated 2021)
文件
Answer to the FASTA exercise
文件
Analysis of DNA and protein sequences
文件
主题 6
5
Probe and Primer Design
文件
Validation of designed primers
文件
Probe and Primer Design manual
文件
sequence1
文件
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
作业
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
文件
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
网页地址
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
作业
Free software
7
Bioinfo-FreeSoftware65-2 pdf
文件
Practice manual of Free_software_64-1.doc
文件
BioEdit_version 7.2.0.zip (12.9 Mb)
文件
sequence_1.fasta
文件
sequence_2.fasta
文件
sequence_3.fasta
文件
sequence_4.fasta
文件
sequence_5.fasta
文件
sequence 3, 4 and 5 combined in FASTA format.txt
文件
ImageJ
文件夹
Gel electrophoresis image
文件
sequence1txt
文件
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
作业
Zoom VDO of lecture Free software in bioinformatics
网页地址
主题 9
8
Handout CMA66_Grad
文件
主题 10
9
Handout Phylogenetic analysis
文件
VDO phylo lecture part 1
网页地址
Phylo lecture part 2 (Demon)
网页地址
LAB practice_Phylogenetic analysis by Kiatichai Faksri
文件
8 fasta sequences except Styphi
网页地址
Seaview5
文件
s. typhi 16srRNA
文件
fasta file 9 spp.
文件
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
作业
主题 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
文件
主题 12
11
Genome Wide Association Study
文件
Assignment GWAS Sep 2023
文件
Please submit assignment by 6 Oct 2023
作业
主题 13
12
Proteomic lecture
文件
16: System biology
13
Introduction to System biology handout 2021
文件
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
文件
Lecture handout NGS analysis
文件
Ubuntu Virtual OS (25 GB) and share folder (with codes)
网页地址
VDO: Setup the virtualbox and FastQC
网页地址
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
网页地址
VDO Link_NGS_Part2 (Week2 workshop)
文件
Assignment for NGS analysis (copy)
文件
FASTQ files to be used in assignment
网页地址
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
作业
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
作业
MacBook M1/M2 need to download this version
网页地址
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
文件
RNA-seq data analysis lab briefing handout
文件
RNA-seq data analysis - assignment instruction
文件
RNA-seq data analysis - dataset for assignment
文件
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
作业
Microbiome analysis
16
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MD627710 Bioinformatics and Big Data Analysis
RNA sequencing analysis
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - assignment instruction
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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