KKU e-Learning
MD 627710 (MD627732-362732) :: Bioinformatics
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RNA-seq data analysis - dataset for assignment
Course management
มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
BINF Post-Genomics
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Nucleic & protein database
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Analysis of DNA & protein sequences
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
หัวข้อ 4
หัวข้อ 5
หัวข้อ 6
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
หัวข้อ 9
Handout CMA66_Grad
หัวข้อ 10
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
หัวข้อ 11
Phamacogenomics 2023, second semesterr by Dr.Wichittra
หัวข้อ 12
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
หัวข้อ 13
Proteomic lecture
16: System biology
Introduction to System biology handout 2021
High Throughput Sequencing Analysis I and II
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
หัวข้อ 16
หัวข้อ 17
Final Examination 2021 Second semester
RNA sequencing analysis
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
RNA-seq data analysis - dataset for assignment
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
Next
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1
มคอ.3 AUN QA Bioinformatics and big data analysis
แหล่งข้อมูล
Course syllabus MD362710 (copy)
แหล่งข้อมูล
Schedule of Bioinfomatics FIRST semester 2023 (V2)
แหล่งข้อมูล
Course Orientation, by Dr.Wises
แหล่งข้อมูล
BINF Post-Genomics
2
Bioinformatics in Post-Genomic Era
แหล่งข้อมูล
Functional Genomics
แหล่งข้อมูล
DNA chip
แหล่งข้อมูล
Introduction to microarrays
แหล่งข้อมูล
Lessons from the Human Genome Project
แหล่งข้อมูล
The Human Genome Has Finally Been Fully Sequenced
แหล่งข้อมูล
Nucleic & protein database
3
Data retrieval from public database_Sakawrat 2023
แหล่งข้อมูล
Assignment for Searching databases
แหล่งข้อมูล
Analysis of DNA & protein sequences
4
Commonly used terms in bioinformatics
แหล่งข้อมูล
FASTA and BLAST excercise (updated 2021)
แหล่งข้อมูล
Answer to the FASTA exercise
แหล่งข้อมูล
Analysis of DNA and protein sequences
แหล่งข้อมูล
หัวข้อ 6
5
Probe and Primer Design
แหล่งข้อมูล
Validation of designed primers
แหล่งข้อมูล
Probe and Primer Design manual
แหล่งข้อมูล
sequence1
แหล่งข้อมูล
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics by Sorujsiri Chareonsudjai
6
Structural genomics handout Dec 2023 (Sorujsiri)
แหล่งข้อมูล
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
URL
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Free software
7
Bioinfo-FreeSoftware65-2 pdf
แหล่งข้อมูล
Practice manual of Free_software_64-1.doc
แหล่งข้อมูล
BioEdit_version 7.2.0.zip (12.9 Mb)
แหล่งข้อมูล
sequence_1.fasta
แหล่งข้อมูล
sequence_2.fasta
แหล่งข้อมูล
sequence_3.fasta
แหล่งข้อมูล
sequence_4.fasta
แหล่งข้อมูล
sequence_5.fasta
แหล่งข้อมูล
sequence 3, 4 and 5 combined in FASTA format.txt
แหล่งข้อมูล
ImageJ
Folder
Gel electrophoresis image
แหล่งข้อมูล
sequence1txt
แหล่งข้อมูล
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
URL
หัวข้อ 9
8
Handout CMA66_Grad
แหล่งข้อมูล
หัวข้อ 10
9
Handout Phylogenetic analysis
แหล่งข้อมูล
VDO phylo lecture part 1
URL
Phylo lecture part 2 (Demon)
URL
LAB practice_Phylogenetic analysis by Kiatichai Faksri
แหล่งข้อมูล
8 fasta sequences except Styphi
URL
Seaview5
แหล่งข้อมูล
s. typhi 16srRNA
แหล่งข้อมูล
fasta file 9 spp.
แหล่งข้อมูล
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
หัวข้อ 11
10
Phamacogenomics 2023, second semesterr by Dr.Wichittra
แหล่งข้อมูล
หัวข้อ 12
11
Genome Wide Association Study
แหล่งข้อมูล
Assignment GWAS Sep 2023
แหล่งข้อมูล
Please submit assignment by 6 Oct 2023
หัวข้อ 13
12
Proteomic lecture
แหล่งข้อมูล
16: System biology
13
Introduction to System biology handout 2021
แหล่งข้อมูล
High Throughput Sequencing Analysis I and II
14
Please prepare your computer
แหล่งข้อมูล
Lecture handout NGS analysis
แหล่งข้อมูล
Ubuntu Virtual OS (25 GB) and share folder (with codes)
URL
VDO: Setup the virtualbox and FastQC
URL
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
URL
VDO Link_NGS_Part2 (Week2 workshop)
แหล่งข้อมูล
Assignment for NGS analysis (copy)
แหล่งข้อมูล
FASTQ files to be used in assignment
URL
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
URL
RNA sequencing analysis
15
RNA-seq data analysis lecture handout
แหล่งข้อมูล
RNA-seq data analysis lab briefing handout
แหล่งข้อมูล
RNA-seq data analysis - assignment instruction
แหล่งข้อมูล
RNA-seq data analysis - dataset for assignment
แหล่งข้อมูล
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
Microbiome analysis
16
ข้ามไปที่เนื้อหาหลัก
MD 627710 (MD627732-362732) :: Bioinformatics
หน้าหลัก
รายวิชาทั้งหมด
สาขาวิชาวิทยาศาสตร์สุขภาพ
คณะแพทยศาสตร์
ภาควิชาจุลชีววิทยา
MD627710 Bioinformatics and Big Data Analysis
RNA sequencing analysis
RNA-seq data analysis - dataset for assignment
RNA-seq data analysis - dataset for assignment
269กิโลไบต์ Archive (ZIP) Uploaded 31/01/2023 21:54
Click
MD627710RNAseqAssignmentDataset_readcounts.zip
link to view the file.
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มคอ.3 AUN QA Bioinformatics and big data analysis
Course syllabus MD362710 (copy)
Schedule of Bioinfomatics FIRST semester 2023 (V2)
Course Orientation, by Dr.Wises
Bioinformatics in Post-Genomic Era
Functional Genomics
DNA chip
Introduction to microarrays
Lessons from the Human Genome Project
The Human Genome Has Finally Been Fully Sequenced
Data retrieval from public database_Sakawrat 2023
Assignment for Searching databases
Commonly used terms in bioinformatics
FASTA and BLAST excercise (updated 2021)
Answer to the FASTA exercise
Analysis of DNA and protein sequences
Probe and Primer Design
Validation of designed primers
Probe and Primer Design manual
sequence1
Assignment of primer design & Submission link, First semester of 2023(within July, 30, 2023
Structural genomics handout Dec 2023 (Sorujsiri)
VDO lecture: Structural genomics Aug 2022 (Sorujsiri)
Structural Genomics assignment submission (Due date 12 August 2023 :23.59)
Bioinfo-FreeSoftware65-2 pdf
Practice manual of Free_software_64-1.doc
BioEdit_version 7.2.0.zip (12.9 Mb)
sequence_1.fasta
sequence_2.fasta
sequence_3.fasta
sequence_4.fasta
sequence_5.fasta
sequence 3, 4 and 5 combined in FASTA format.txt
ImageJ
Gel electrophoresis image
sequence1txt
Assignment and submission of Free software in bioinformatics (Due Date; September 3, 2023)
Zoom VDO of lecture Free software in bioinformatics
Handout CMA66_Grad
Handout Phylogenetic analysis
VDO phylo lecture part 1
Phylo lecture part 2 (Demon)
LAB practice_Phylogenetic analysis by Kiatichai Faksri
8 fasta sequences except Styphi
Seaview5
s. typhi 16srRNA
fasta file 9 spp.
Submission assignment Phylogenetic analysis: Tree figures and questions-answers 2023 (Due date 23 August2023)
Phamacogenomics 2023, second semesterr by Dr.Wichittra
Genome Wide Association Study
Assignment GWAS Sep 2023
Please submit assignment by 6 Oct 2023
Proteomic lecture
Introduction to System biology handout 2021
Please prepare your computer
Lecture handout NGS analysis
Ubuntu Virtual OS (25 GB) and share folder (with codes)
VDO: Setup the virtualbox and FastQC
VDO Part 1_WGS anlaysis_anlaysis part_FastQC to Variant comparisons
VDO Link_NGS_Part2 (Week2 workshop)
Assignment for NGS analysis (copy)
FASTQ files to be used in assignment
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023)
Submission assignment NGS analysis: 1 txt file for the code and 1 Word file for the Venn diagram+optional of comparison Table (Due date 6 Sep 2023) (copy)
MacBook M1/M2 need to download this version
RNA-seq data analysis lecture handout
RNA-seq data analysis lab briefing handout
RNA-seq data analysis - assignment instruction
HAND IN your RNA-seq data analysis ASSIGNMENT here - deadline 28 Feb 2023
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